PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 476aa    MW: 52655.9 Da    PI: 6.633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006071genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.8e-07265286223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  Lus10006071 265 FCTICGKGFKRDANLRMHMRGH 286
                  6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.21E-5262289No hitNo description
PROSITE profilePS5015712.03264291IPR007087Zinc finger, C2H2
SMARTSM003550.0026264286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-6265316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSGFMGKLGS LAFQMWGLAR SVSEFELLVV SIVDHGCVMV RGLLHWTSPK MDPKEVLCGE  60
PWAKPSSSND PDPKISLQNV PSLMDYGFRI DQPYQDRNEN NNKAPDWDPR TMLNNLSFLE  120
QKIHQLQDVV HLIIGRKGQE VPPLGSRPDE LVTQQQQLVT ADLTSIIVQL ISTAGSLLPS  180
VKHTLTASNT IGQFEQFGPV QPKPPAGTAL VPDQTDTMMT DHNCSTEEHE MKDEEDTEDG  240
ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTPAALAKPP  300
KEATGSEPAM IKRYSCPFAG CKRNKDHKKF QPLKTILCVT NRGRCHTKKF SVIADLKTHE  360
KHCGRDKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPPDE TKALFEKGED STYIEAAAAA  420
ANNKVGIGAL DFNCLGSNSN IMDFKSVLEA DDTAAATACF SQGHFQEKFH EKPKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237278.11e-171PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N51e-154STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A067K5K71e-170A0A067K5K7_JATCU; Uncharacterized protein
STRINGVIT_18s0072g00840.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-143C2H2 family protein